Decision-Based Marginal Total Variation Diffusion for Impulsive Noise Removal in Color Images

Impulsive noise removal for color images usually employs vector median filter, switching median filter, the total variation L1 method, and variants. These approaches, however, often introduce excessive smoothing and can result in extensive visual feature blurring and thus are suitable only for images with low density noise. A marginal method to reduce impulsive noise is proposed in this paper that overcomes this limitation that is based on the following facts: (i) each channel in a color image is contaminated independently, and contaminative components are independent and identically distributed; (ii) in a natural image the gradients of different components of a pixel are similar to one another. This method divides components into different categories based on different noise characteristics. If an image is corrupted by salt-and-pepper noise, the components are divided into the corrupted and the noise-free components; if the image is corrupted by random-valued impulses, the components are divided into the corrupted, noise-free, and the possibly corrupted components. Components falling into different categories are processed differently. If a component is corrupted, modified total variation diffusion is applied; if it is possibly corrupted, scaled total variation diffusion is applied; otherwise, the component is left unchanged. Simulation results demonstrate its effectiveness

Changes in the Microbial Community Structure and Soil Chemical Properties of Vertisols Under Different Cropping Systems in Northern China

The predominant cropping system and management practices play an important role in soil physico-chemical properties and microbiome composition and diversity. This study analyzed the changes in soil fertility and the microbial community in four soybean-based cropping systems over 12 years. Amplification subsequencing techniques were used to compare soil community structures among the systems and identify significant positive and negative fertility factors. Soybean cropping favored the accumulation of OM and the available N, K DTPA Fe, Mn, Zn and Cu contents in soil but not fixed available P. The WS and CS cropping systems were conducive to the fixed available P, but they consumed OM, DTPA K, and Zn. The SC exhibited the lowest soil bacterial and archaeal abundance and diversity but high fungal abundance and diversity. The dominant Proteobacteria in the SC were significantly positively correlated with soil DTPA Fe and Mn. The dominant Actinobacteria were positively correlated with available P, DTPA Cu and Mn. The FS cropping system contained 764 unique bacterial species, 724 unique fungal species and the highest relative abundance of Protista. The FS had high microbial diversity, with high relative abundances of Bacteroidetes and Zygomycota and a significantly lower relative abundance of Actinobacteria. The Bacteroidetes were significantly correlated with available N, OM and DTPA Fe and negatively correlated with available P and DTPA Cu. Zygomycota was negatively correlated with available P and DTPA Cu. In the CS and WS, the soil bacterial abundance and diversity were moderate. The dominant Acidobacteria was significantly negatively correlated with soil DTPA, Fe and Mn. The CS exhibited the lowest fungal abundance and diversity. Furthermore, the relative abundance of Ascomycota was significantly improved in the WS and significantly positively correlated with available P and DTPA Cu. Decreases in the available P, K, DTPA Cu, and Mn of Vertisols greatly affect microbial community structure, and these nutrients regulate bacterial and fungal abundance and diversity. Compared to the SC, the FS, WS, and CS had more balanced soil fertility and microbial stability, but diverse cropping systems are most conducive to soil productivity. These findings are of great relevance for protecting the ecological environment

Step pyrolysis of N-rich industrial biowastes: Regulatory mechanism of NOx precursor formation via exploring decisive reaction pathways

Step pyrolysis of N-rich industrial biowastes was used to explore decisive reaction pathways and regulatory mechanisms of NOx precursor formation. Three typical ones involving medium-density fiberboard waste (MFW), penicillin mycelia waste (PMW) and sewage sludge (SS) were employed to compare the formation characteristics of NOx precursors during one-step and two-step pyrolysis. Results demonstrated that considerable NH3-N pre-dominated NOx precursors for one-step pyrolysis at low temperatures, depending on primary pyrolysis of labile amide-N/inorganic-N in fuels. Meanwhile, NOx precursors differed in the increment of each species yield while resembled in the total yield of 20-45 wt.% among three samples at high temperatures, due to specific prevailing reaction pathways linking with distinctive amide-N types. Subsequently, compared with one-step pyrolysis uniformly (800 degrees C), by manipulating intensities of reaction pathways at different stages (selecting differential intermediate feedstocks), two-step pyrolysis was capable of minimizing NOx precursor-N yield by 36-43% with a greater impact on HCN-N (75-85%) than NH3-N (9-37%), demonstrating its great capacity on regulating the formation of NOx precursors for industrial biowaste pyrolysis. These observations were beneficial to develop effective insights into N-pollution emission control during their thermal reutilization

Structural, Antigenic, and Evolutionary Characterizations of the Envelope Protein of Newly Emerging Duck Tembusu Virus

Since the first reported cases of ducks infected with a previously unknown flavivirus in eastern China in April 2010, the virus, provisionally designated Duck Tembusu Virus (DTMUV), has spread widely in domestic ducks in China and caused significant economic losses to poultry industry. In this study, we examined in detail structural, antigenic, and evolutionary properties of envelope (E) proteins of six DTMUV isolates spanning 2010–2012, each being isolated from individual farms with different geographical locations where disease outbreaks were documented. Structural analysis showed that E proteins of DTMUV and its closely related flavivirus (Japanese Encephalitis Virus) shared a conserved array of predicted functional domains and motifs. Among the six DTMUV strains, mutations were observed only at thirteen amino acid positions across three separate domains of the E protein. Interestingly, these genetic polymorphisms resulted in no detectable change in viral neutralization properties as demonstrated in a serum neutralization assay. Furthermore, phylogenetic analysis of the nucleotide sequences of the E proteins showed that viruses evolved into two distinct genotypes, termed as DTMUV.I and DTMUV.II, with II emerging as the dominant genotype. New findings described here shall give insights into the antigenicity and evolution of this new pathogen and provide guidance for further functional studies of the E protein for which no effective vaccine has yet been developed

Clinical Performance Evaluation of VersaTrek 528 Blood Culture System in a Chinese Tertiary Hospital

Background: The aim of this study was to evaluate the clinical performance of VersaTrek 528 compared to BACTEC FX 400 blood culture (BC) systems.Materials and Methods: Simulated and clinically obtained BCs were used in the study. Confirmed bacterial species (n = 78), including 43 Gram-positives, 30 Gram-negatives, and 5 Candida albicans strains, were each inoculated into BC bottles. Clinically obtained BCs were subdivided into two groups, A and B. In group A were 72 BC sets (pair: aerobic and anaerobic) in which a set inoculated with 5 ml blood was processed in the VersaTrek BC system, whilst the one inoculated with 10 ml blood was processed in the FX BC system. In group B, 76 BC sets (pairs) corresponding to 152 VersaTrek bottles and 152 FX bottles were inoculated with the same volume (10 ml) of blood, and processed in each system.Results: In the simulated BC study, 90% (63/70) of the VersaTrek aerobic bottles were positive, which was higher than that of FX 400 (59/70, 84%), but was not statistically significant (P = 0.423). In contrast, FX 400 anaerobic bottles had a higher positive rate than the other BC system (84 vs. 77%), although it was statistically insignificant (P = 0.267). Time to detection of organisms in the two BCs was comparable for both aerobic (P = 0.131) and anaerobic bottles (P = 0.104). In clinical BCs of group A, FX BC system had slightly higher positive rates for both aerobic (11.1 vs. 9.7%, P = 0.312) and anaerobic (8.3 vs. 6.9%, P = 0.375) bottles. However, the difference was not statistically significant. In group B, VersaTrek aerobic bottles had a higher positive rate compared to the other BC system (10.5 vs. 5.2%, P = 0.063). In terms of positive rates of sub-studies A and B, VersaTrek and FX BC systems were comparable.Conclusion: There was no significant difference between the two BC systems in the detection of bacteria and fungi in simulated BCs. In clinical BCs, the performance of the VersaTrek BC system, with inoculation of 5 or 10 ml patient’s blood, was comparable to the FX system with inoculation of 10 ml patient’s blood

Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome

The African eggplant (Solanum aethiopicum) is a nutritious traditional vegetable used in many African countries, including Uganda and Nigeria. It is thought to have been domesticated in Africa from its wild relative, Solanum anguivi. S.aethiopicum has been routinely used as a source of disease resistance genes for several Solanaceae crops, including Solanum melongena. A lack of genomic resources has meant that breeding of S. aethiopicum has lagged behind other vegetable crops. Results: We assembled a 1.02-Gb draft genome of S. aethiopicum, which contained predominantly repetitive sequences (78.9%). We annotated 37,681 gene models, including 34,906 protein-coding genes. Expansion of disease resistance genes was observed via 2 rounds of amplification of long terminal repeat retrotransposons, which may have occurred ∼1.25 and 3.5 million years ago, respectively. By resequencing 65 S. aethiopicum and S. anguivi genotypes, 18,614,838 single-nucleotide polymorphisms were identified, of which 34,171 were located within disease resistance genes. Analysis of domestication and demographic history revealed active selection for genes involved in drought tolerance in both “Gilo” and “Shum” groups. A pan-genome of S. aethiopicum was assembled, containing 51,351 protein-coding genes; 7,069 of these genes were missing from the reference genome. Conclusions: The genome sequence of S. aethiopicum enhances our understanding of its biotic and abiotic resistance. The single-nucleotide polymorphisms identified are immediately available for use by breeders. The information provided here will accelerate selection and breeding of the African eggplant, as well as other crops within the Solanaceae family

What can Africa Learn from China's Experience in Agricultural Development?

Submitted version of Bulletin articleThere has been a growing interest in China’s rapid economic growth, particularly agriculture-led growth and poverty reduction. In fact, China and Africa have developed their agriculture under different historical conditions. China’s agriculture-led growth and poverty reduction and small holder based agricultural development policy can provide a useful model for African countries to develop their own agricultural development strategies to reduce poverty.DFID, ESR

Morphological diversity of single neurons in molecularly defined cell types.

Dendritic and axonal morphology reflects the input and output of neurons and is a defining feature of neuronal types1,2, yet our knowledge of its diversity remains limited. Here, to systematically examine complete single-neuron morphologies on a brain-wide scale, we established a pipeline encompassing sparse labelling, whole-brain imaging, reconstruction, registration and analysis. We fully reconstructed 1,741 neurons from cortex, claustrum, thalamus, striatum and other brain regions in mice. We identified 11 major projection neuron types with distinct morphological features and corresponding transcriptomic identities. Extensive projectional diversity was found within each of these major types, on the basis of which some types were clustered into more refined subtypes. This diversity follows a set of generalizable principles that govern long-range axonal projections at different levels, including molecular correspondence, divergent or convergent projection, axon termination pattern, regional specificity, topography, and individual cell variability. Although clear concordance with transcriptomic profiles is evident at the level of major projection type, fine-grained morphological diversity often does not readily correlate with transcriptomic subtypes derived from unsupervised clustering, highlighting the need for single-cell cross-modality studies. Overall, our study demonstrates the crucial need for quantitative description of complete single-cell anatomy in cell-type classification, as single-cell morphological diversity reveals a plethora of ways in which different cell types and their individual members may contribute to the configuration and function of their respective circuits